Glad I found this post! I just spent 3+ hours watching youtube tutorials trying to get a simple 3-shot focus stack to work in CC. I have the exact same problem where only 1 layer mask is visible and the other layer masks are completely black (invisible). CC did not "select the in focus areas" as demonstrated in so many videos. After much weeping and gnashing of teeth, I can just walk away from the computer and try again when Adobe gets a fix put out.
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